In version 4, the Seurat documentation was transitioned to pkgdown. Here we provide access to all previous versions of the documentation.
Version 4.3, 2-3 tutorials
PBMC scATAC-seq Vignette
v4.3v3.2v3.1v3.0Cell-Cycle Scoring and Regression
v4.3v3.2v3.1v3.0v2.4Interoperability between single-cell object formats
v4.3v4.3v3.2v3.1v3.0v2.4Differential expression testing
v4.3v3.2v3.1v3.0v2.4Seurat - Dimensional Reduction Vignette
v4.3v3.2v3.1v3.0v2.4Parallelization in Seurat with future
v4.3v3.2v3.1v3.0Demultiplexing with hashtag oligos (HTOs)
v4.3v3.2v3.1v3.0v2.4Tutorial: Integrating stimulated vs. control PBMC datasets to learn cell- type specific responses
v3.2v3.1v3.0v2.4Integration and Label Transfer
v3.2v3.1v3.0Mapping and annotating query datasets
v4.3Tips for integrating large datasets
v4.3Fast integration using reciprocal PCA (RPCA)
v4.3Seurat - Interaction Tips
v4.3v3.2v3.1v3.0v2.4Guided Clustering of the Microwell-seq Mouse Cell Atlas
v3.2v3.1v3.0v2.4Seurat - Combining Two 10X Runs
v4.3Mixscape Vignette
v4.3v3.2v3.1Multimodal reference mapping
v4.3Using Seurat with multi-modal data
v4.3v3.2v3.1v3.0v2.4Guided tutorial — 2,700 PBMCs
v4.3v3.2v3.1v3.0v2.4v1.4Using sctransform in Seurat
v4.3v3.2v3.1v3.0Analysis, visualization, and integration of spatial datasets with Seurat
v4.3v3.2New data visualization methods in v3.0
v4.3v3.2v3.1v3.0v2.4Weighted Nearest Neighbor Analysis
Version 1.3-1.4 tutorials
For versions 1.3-1.4, we provide access to the old documentation pages here
Version <=1.2 tutorials
For versions <=1.2, we provide access to the old documentation pages here