In version 4, the Seurat documentation was transitioned to pkgdown. Here we provide access to all previous versions of the documentation.

Version 2-3 tutorials

PBMC scATAC-seq Vignette

v3.2v3.1v3.0

Cell-Cycle Scoring and Regression

v3.2v3.1v3.0v2.4

Interoperability between single-cell object formats

v3.2v3.1v3.0v2.4

Differential expression testing

v3.2v3.1v3.0v2.4

Seurat - Dimensional Reduction Vignette

v3.2v3.1v3.0v2.4

Parallelization in Seurat with future

v3.2v3.1v3.0

Demultiplexing with hashtag oligos (HTOs)

v3.2v3.1v3.0v2.4

Tutorial: Integrating stimulated vs. control PBMC datasets to learn cell- type specific responses

v3.2v3.1v3.0v2.4

Integration and Label Transfer

v3.2v3.1v3.0

Seurat - Interaction Tips

v3.2v3.1v3.0v2.4

Guided Clustering of the Microwell-seq Mouse Cell Atlas

v3.2v3.1v3.0v2.4

Mixscape Vignette

v3.2v3.1

Using Seurat with multi-modal data

v3.2v3.1v3.0v2.4

Guided tutorial — 2,700 PBMCs

v3.2v3.1v3.0v2.4v1.4

Using sctransform in Seurat

v3.2v3.1v3.0

Analysis, visualization, and integration of spatial datasets with Seurat

v3.2

New data visualization methods in v3.0

v3.2v3.1v3.0v2.4

Version 1.3-1.4 tutorials

For versions 1.3-1.4, we provide access to the old documentation pages here

Version <=1.2 tutorials

For versions <=1.2, we provide access to the old documentation pages here