Seurat is available on CRAN for all platforms. To install, run:
Seurat does not require, but makes use of, packages developed by other labs that can substantially enhance speed and performance. These include presto (Korunsky/Raychaudhari labs), BPCells (Greenleaf Lab), and glmGamPoi (Huber Lab). We recommend users install these along with users:
setRepositories(ind = 1:3, addURLs = c('https://satijalab.r-universe.dev', 'https://bnprks.r-universe.dev/')) install.packages(c("BPCells", "presto", "glmGamPoi"))
We also recommend installing these additional packages, which are used in our vignettes, and enhance the functionality of Seurat:
Seurat v4.4.0 can be installed with the following command:
Old versions of Seurat, from Seurat v2.0.1 and up, are hosted in CRAN’s archive. To install an old version of Seurat, run:
# Install the remotes package install.packages('remotes') # Replace 'X.X.X' with your desired version remotes::install_version(package = 'Seurat', version = package_version('X.X.X'))
Install the development version of Seurat - directly from GitHub.