Welcome to the Satija Lab

Our goal is to understand how cellular heterogeneity encodes the molecular structure, function, and regulation of complex biological systems. Primarily using single cell genomics, we analyze systems by profiling their most fundamental units individually - a ‘bottom-up’ approach that allows us to study how diverse groups of cells work together to drive biological processes and behaviors.

We’re located at the New York Genome Center in Lower Manhattan, a short walk from our joint appointment at the NYU Center for Genomics and Systems Biology .

Recent News


We’re excited to release Signac! Learn more about how to use Signac for analysis, interpretation, and exploration of single-cell chromatin datasets.


Interested in single cell genomics but need help getting started? You can download slides, video and resources from our third annual Single Cell Genomics Day workshop, focused on exciting recent developments in the field.


Learn more about new methods we've developed for single-cell RNA-seq multiplexing, integration, and normalization.


Check out some of our 2018 publications publications on inhibitory interneurogenesis, multimodal single cell profiling, human hematopoiesis, cardiophyrangeal fate specification, and rheumatoid arthritis synovial tissue.


We're excited to release Seurat v2.3! Learn more, about new methods for dataset visualization, interaction, integration, differential expression, and multimodal analysis.


Christoph designed our "How many cells" and "Cost per cell" tools, to help plan experimental design.