Load a 10X Genomics Visium Image

Read10X_Image(image.dir, filter.matrix = TRUE, ...)

Arguments

image.dir

Path to directory with 10X Genomics visium image data; should include files tissue_lowres_iamge.png, scalefactors_json.json and tissue_positions_list.csv

filter.matrix

Filter spot/feature matrix to only include spots that have been determined to be over tissue.

...

Ignored for now

Value

A VisiumV1 object

See also