Load a 10X Genomics Visium Image

Read10X_Image(
  image.dir,
  image.name = "tissue_lowres_image.png",
  filter.matrix = TRUE,
  ...
)

Arguments

image.dir

Path to directory with 10X Genomics visium image data; should include files tissue_lowres_image.png,

image.name

The file name of the image. Defaults to tissue_lowres_image.png. scalefactors_json.json and tissue_positions_list.csv

filter.matrix

Filter spot/feature matrix to only include spots that have been determined to be over tissue.

...

Ignored for now

Value

A VisiumV1 object