Read 10X hdf5 file

Source: R/preprocessing.R

Read count matrix from 10X CellRanger hdf5 file. This can be used to read both scATAC-seq and scRNA-seq matrices.

Read10X_h5(filename, use.names = TRUE, unique.features = TRUE)

Arguments

filename

Path to h5 file
use.names

Label row names with feature names rather than ID numbers.
unique.features

Make feature names unique (default TRUE)

Value

Returns a sparse matrix with rows and columns labeled. If multiple genomes are present, returns a list of sparse matrices (one per genome).