Visualize features spatially and interactively
Usage
ISpatialFeaturePlot(
object,
feature,
image = NULL,
image.scale = "lowres",
slot = "data",
alpha = c(0.1, 1)
)Arguments
- object
A Seurat object
- feature
Feature to visualize
- image
Name of the image to use in the plot
- image.scale
Choose the scale factor ("lowres"/"hires") to apply in order to matchthe plot with the specified `image` - defaults to "lowres"
- slot
If plotting a feature, which data slot to pull from (counts, data, or scale.data)
- alpha
Controls opacity of spots. Provide as a vector specifying the min and max for SpatialFeaturePlot. For SpatialDimPlot, provide a single alpha value for each plot.