Visualize features spatially and interactively

Visualize features spatially and interactively

ISpatialFeaturePlot(
  object,
  feature,
  image = NULL,
  image.scale = "lowres",
  slot = "data",
  alpha = c(0.1, 1)
)

Arguments

object

A Seurat object

feature

Feature to visualize

image

Name of the image to use in the plot

image.scale

Choose the scale factor ("lowres"/"hires") to apply in order to matchthe plot with the specified `image` - defaults to "lowres"

slot

If plotting a feature, which data slot to pull from (counts, data, or scale.data)

alpha

Controls opacity of spots. Provide as a vector specifying the min and max for SpatialFeaturePlot. For SpatialDimPlot, provide a single alpha value for each plot.

Value

Returns final plot as a ggplot object