R/utilities.R
GroupCorrelation.Rd
Compute the correlation of features broken down by groups with another covariate
GroupCorrelation( object, assay = NULL, slot = "scale.data", var = NULL, group.assay = NULL, min.cells = 5, ngroups = 6, do.plot = TRUE )
object | Seurat object |
---|---|
assay | Assay to pull the data from |
slot | Slot in the assay to pull feature expression data from (counts, data, or scale.data) |
var | Variable with which to correlate the features |
group.assay | Compute the gene groups based off the data in this assay. |
min.cells | Only compute for genes in at least this many cells |
ngroups | Number of groups to split into |
do.plot | Display the group correlation boxplot (via |
A Seurat object with the correlation stored in metafeatures