This convenience function subsets a Seurat object based on calculated inflection points.

SubsetByBarcodeInflections(object)

Arguments

object

Seurat object

Value

Returns a subsetted Seurat object.

Details

See [CalculateBarcodeInflections()] to calculate inflection points and [BarcodeInflectionsPlot()] to visualize and test inflection point calculations.

See also

Author

Robert A. Amezquita, robert.amezquita@fredhutch.org

Examples

data("pbmc_small") pbmc_small <- CalculateBarcodeInflections( object = pbmc_small, group.column = 'groups', threshold.low = 20, threshold.high = 30 ) SubsetByBarcodeInflections(object = pbmc_small)
#> An object of class Seurat #> 230 features across 16 samples within 1 assay #> Active assay: RNA (230 features, 20 variable features) #> 2 dimensional reductions calculated: pca, tsne