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Seurat
5.0.1
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Seurat v4
Vignettes
Introductory Vignettes
PBMC 3K guided tutorial
Using Seurat with multi-modal data
Data Integration
Introduction to scRNA-seq integration
Mapping and annotating query datasets
Fast integration using reciprocal PCA (RPCA)
Tips for integrating large datasets
Integrating scRNA-seq and scATAC-seq data
Multimodal reference mapping
Streamlined scRNA-seq Integration
Cross-modality Bridge Integration
Spatial analysis
Analysis of spatial datasets (Imaging-based)
Analysis of spatial datasets (Sequencing-based)
New Statistical Methods
Weighted Nearest Neighbor Analysis
Mixscape Vignette
Using sctransform in Seurat
SCTransform, v2 regularization
Scalable Dataset Analysis
Unsupervised clustering of 1.3M neurons
Integrating/comparing healthy and diabetic samples
Supervised mapping of 1.5M immune cells
Other
Data visualization vignette
Cell-cycle scoring and regression
Differential expression testing
Demultiplexing with hashtag oligos (HTOs)
Interoperability between single-cell object formats
Parallelization in Seurat with future
Dimensional reduction vignette
Seurat essential commands list
Seurat interaction tips
Merging Seurat objects
Extensions
FAQ
News
Reference
Archive
Articles
All vignettes
Map COVID PBMC datasets to a healthy reference
Sketch integration using a 1 million cell dataset from Parse Biosciences
Documentation Archive
Integrating scRNA-seq and scATAC-seq data
Cell-Cycle Scoring and Regression
Interoperability between single-cell object formats
Differential expression testing
Seurat - Dimensional Reduction Vignette
Seurat Command List
Seurat Extension Packages
Parallelization in Seurat with future
Getting Started with Seurat
Introduction to Seurat v5
Demultiplexing with hashtag oligos (HTOs)
Installation Instructions for Seurat
Installation Instructions for Seurat
Introduction to scRNA-seq integration
Tips for integrating large datasets
Mapping and annotating query datasets
Fast integration using reciprocal PCA (RPCA)
Seurat - Interaction Tips
Seurat - Combining Two 10X Runs
Mixscape Vignette
Multimodal reference mapping
Using Seurat with multimodal data
Seurat - Guided Clustering Tutorial
Introduction to SCTransform, v2 regularization
Using sctransform in Seurat
Documentation Archive
Integrating scRNA-seq and scATAC-seq data
Using BPCells with Seurat Objects
Cell-Cycle Scoring and Regression
Interoperability between single-cell object formats
Differential expression testing
Seurat - Dimensional Reduction Vignette
Seurat v5 Command Cheat Sheet
Seurat Extension Packages
Parallelization in Seurat with future
Getting Started with Seurat
Demultiplexing with hashtag oligos (HTOs)
Integrative analysis in Seurat v5
Dictionary Learning for cross-modality integration
Introduction to scRNA-seq integration
Tips for integrating large datasets
Mapping and annotating query datasets
Fast integration using reciprocal PCA (RPCA)
Seurat - Interaction Tips
Seurat - Combining Two 10X Runs
Mixscape Vignette
Multimodal reference mapping
Using Seurat with multimodal data
Seurat - Guided Clustering Tutorial
Introduction to SCTransform, v2 regularization
Using sctransform in Seurat
Sketch-based analysis in Seurat v5
Analysis, visualization, and integration of spatial datasets with Seurat
Analysis of Image-based Spatial Data in Seurat
Changes in Seurat v4
Data visualization methods in Seurat
Weighted Nearest Neighbor Analysis
Analysis, visualization, and integration of spatial datasets with Seurat
Analysis of Image-based Spatial Data in Seurat
Changes in Seurat v4
Data visualization methods in Seurat
Weighted Nearest Neighbor Analysis