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Seurat 6.0.0

Install
Get started
- Core workflows
- PBMC 3K guided tutorial
- Data visualization
- Normalization with SCTransform
- Introduction to multimodal analysis
- Essential commands
- Seurat v6
- Sample-level analysis with scSLIDE
- Analyzing perturbation responses with RNA fingerprinting
- Cell type annotation with Pan-human Azimuth
- Data integration
- Introduction to scRNA-seq integration
- Comparing scRNA-seq integration methods
- Reference mapping and cell type annotation
- Multimodal analysis
- Bridge integration with dictionary learning
- Weighted nearest neighbor analysis
- Integrating scRNA-seq and scATAC-seq data
- Multimodal reference mapping
- Perturbation analysis with Mixscape
- Large datasets
- Sketch-based analysis
- Sketch integration of 1 million cells
- Mapping COVID-19 PBMCs to a healthy reference
- On-disk analysis with BPCells
- Spatial analysis
- Imaging-based spatial analysis
- Sequencing-based spatial analysis
- Visium HD analysis (binned data)
- Visium HD analysis (cell segmentations)
- Loading and visualizing 10x Atera data
- Additional workflows
- Cell-cycle scoring and regression
- Differential expression and pseudobulk analysis
- Demultiplexing with cell hashing
Extensions
News
Reference

License

YEAR: 2021
COPYRIGHT HOLDER: Seurat authors

Developed by Rahul Satija, Satija Lab and Collaborators.

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