Get SCT results from an Assay

Source: R/generics.R, R/objects.R

Pull the SCTResults information from an SCTAssay object.

SCTResults(object, ...)

SCTResults(object, ...) <- value

# S3 method for SCTModel
SCTResults(object, slot, ...)

# S3 method for SCTModel
SCTResults(object, slot, ...) <- value

# S3 method for SCTAssay
SCTResults(object, slot, model = NULL, ...)

# S3 method for SCTAssay
SCTResults(object, slot, model = NULL, ...) <- value

# S3 method for Seurat
SCTResults(object, assay = "SCT", slot, model = NULL, ...)

Arguments

object

An object

...

Arguments passed to other methods (not used)

value

new data to set

slot

Which slot to pull the SCT results from

model

Name of SCModel to pull result from. Available names can be retrieved with levels.

assay

Assay in the Seurat object to pull from

Value

Returns the value present in the requested slot for the requested group. If group is not specified, returns a list of slot results for each group unless there is only one group present (in which case it just returns the slot directly).