Get SCT results from an Assay — SCTResults • Seurat

Pull the SCTResults information from an SCTAssay object.

Usage

SCTResults(object, ...)

SCTResults(object, ...) <- value

# S3 method for class 'SCTModel'
SCTResults(object, slot, ...)

# S3 method for class 'SCTModel'
SCTResults(object, slot, ...) <- value

# S3 method for class 'SCTAssay'
SCTResults(object, slot, model = NULL, ...)

# S3 method for class 'SCTAssay'
SCTResults(object, slot, model = NULL, ...) <- value

# S3 method for class 'Seurat'
SCTResults(object, assay = "SCT", slot, model = NULL, ...)

Arguments

object: An object
...: Arguments passed to other methods (not used)
value: new data to set
slot: Which slot to pull the SCT results from
model: Name of SCModel to pull result from. Available names can be retrieved with levels.
assay: Assay in the Seurat object to pull from

Value

Returns the value present in the requested slot for the requested group. If group is not specified, returns a list of slot results for each group unless there is only one group present (in which case it just returns the slot directly).