Seurat 4.0.6.9003
  • Install
  • Get started
  • Vignettes
    • Introductory Vignettes
    • PBMC 3K guided tutorial
    • Using Seurat with multi-modal data
    • Analysis, visualization, and integration of spatial datasets with Seurat
    • Data Integration
    • Introduction to scRNA-seq integration
    • Mapping and annotating query datasets
    • Fast integration using reciprocal PCA (RPCA)
    • Tips for integrating large datasets
    • Integrating scRNA-seq and scATAC-seq data
    • Multimodal reference mapping
    • New Statistical Methods
    • Weighted Nearest Neighbor Analysis
    • Mixscape Vignette
    • Using sctransform in Seurat
    • Other
    • Data visualization vignette
    • Cell-cycle scoring and regression
    • Differential expression testing
    • Demultiplexing with hashtag oligos (HTOs)
    • Interoperability between single-cell object formats
    • Parallelization in Seurat with future
    • Dimensional reduction vignette
    • Seurat essential commands list
    • Seurat interaction tips
    • Merging Seurat objects
  • Extensions
  • FAQ
  • News
  • Reference
  • Archive

Objects exported from other packages

Source: R/reexports.R
reexports.Rd

These objects are imported from other packages. Follow the links below to see their documentation.

SeuratObject

AddMetaData, Assays, Cells, CellsByIdentities, Command, CreateAssayObject, CreateDimReducObject, CreateSeuratObject, DefaultAssay, DefaultAssay<-, Distances, Embeddings, FetchData, GetAssayData, GetImage, GetTissueCoordinates, HVFInfo, Idents, Idents<-, Images, Index, Index<-, Indices, IsGlobal, JS, JS<-, Key, Key<-, Loadings, Loadings<-, LogSeuratCommand, Misc, Misc<-, Neighbors, Project, Project<-, Radius, Reductions, RenameCells, RenameIdents, ReorderIdent, RowMergeSparseMatrices, SVFInfo, SetAssayData, SetIdent, SpatiallyVariableFeatures, StashIdent, Stdev, Tool, Tool<-, UpdateSeuratObject, VariableFeatures, VariableFeatures<-, WhichCells, as.Graph, as.Neighbor, as.Seurat, as.sparse

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Developed by Paul Hoffman, Satija Lab and Collaborators.

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