Seurat 5.5.0
  • Install
  • Get started
  • Vignettes
    • Introductory vignettes
      • Guided clustering tutorial (PBMC 3k)
      • Data visualization methods
      • Using sctransform in Seurat
      • Using Seurat with multimodal data
      • Essential commands
    • Data integration
      • Introduction to scRNA-seq integration
      • Integrative analysis in Seurat v5
      • Mapping and annotating query datasets
    • Multi-assay data
      • Dictionary learning for cross-modality integration
      • Weighted nearest neighbor analysis
      • Integrating scRNA-seq and scATAC-seq data
      • Multimodal reference mapping
      • Using mixscape in Seurat
    • Massively scalable analysis
      • Sketch-based analysis in Seurat v5
      • Sketch integration using a 1m cell dataset
      • Reference mapping analysis with 1.5m cells
      • Using BPCells with Seurat objects
    • Spatial analysis
      • Analysis of spatial datasets (imaging-based)
      • Analysis of spatial datasets (sequencing-based)
      • Analysis of Visium HD spatial datasets
      • Analysis of Visium HD with cell segmentations
    • Other
      • Cell-cycle scoring and regression
      • Differential expression testing
      • Demultiplexing with hashtag oligos (HTOs)
  • Extensions
  • FAQ
  • News
  • Reference
  • Archive

Objects exported from other packages

Source: R/reexports.R
reexports.Rd

These objects are imported from other packages. Follow the links below to see their documentation.

SeuratObject

AddMetaData, as.Graph, as.Neighbor, as.Seurat, as.sparse, Assays, Cells, CellsByIdentities, Command, CreateAssayObject, CreateDimReducObject, CreateSeuratObject, DefaultAssay, DefaultAssay<-, Distances, Embeddings, FetchData, GetAssayData, GetImage, GetTissueCoordinates, HVFInfo, Idents, Idents<-, Images, Index, Index<-, Indices, IsGlobal, JS, JS<-, Key, Key<-, Loadings, Loadings<-, LogSeuratCommand, Misc, Misc<-, Neighbors, Project, Project<-, Radius, Reductions, RenameCells, RenameIdents, ReorderIdent, RowMergeSparseMatrices, SetAssayData, SetIdent, SpatiallyVariableFeatures, StashIdent, Stdev, SVFInfo, Tool, Tool<-, UpdateSeuratObject, VariableFeatures, VariableFeatures<-, WhichCells

components(object, ...)

x %||% y

x %iff% y

Contents

Developed by Rahul Satija, Satija Lab and Collaborators.

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