Seurat 5.2.0
  • Install
  • Get started
  • Vignettes
    • Introductory Vignettes
    • PBMC 3K guided tutorial
    • Data visualization vignette
    • SCTransform, v2 regularization
    • Using Seurat with multi-modal data
    • Seurat v5 Command Cheat Sheet
    • Data Integration
    • Introduction to scRNA-seq integration
    • Integrative analysis in Seurat v5
    • Mapping and annotating query datasets
    • Multi-assay data
    • Dictionary Learning for cross-modality integration
    • Weighted Nearest Neighbor Analysis
    • Integrating scRNA-seq and scATAC-seq data
    • Multimodal reference mapping
    • Mixscape Vignette
    • Massively scalable analysis
    • Sketch-based analysis in Seurat v5
    • Sketch integration using a 1 million cell dataset from Parse Biosciences
    • Map COVID PBMC datasets to a healthy reference
    • BPCells Interaction
    • Spatial analysis
    • Analysis of spatial datasets (Imaging-based)
    • Analysis of spatial datasets (Sequencing-based)
    • Other
    • Cell-cycle scoring and regression
    • Differential expression testing
    • Demultiplexing with hashtag oligos (HTOs)
  • Extensions
  • FAQ
  • News
  • Reference
  • Archive

Objects exported from other packages

Source: R/reexports.R
reexports.Rd

These objects are imported from other packages. Follow the links below to see their documentation.

SeuratObject

AddMetaData, as.Graph, as.Neighbor, as.Seurat, as.sparse, Assays, Cells, CellsByIdentities, Command, CreateAssayObject, CreateDimReducObject, CreateSeuratObject, DefaultAssay, DefaultAssay<-, Distances, Embeddings, FetchData, GetAssayData, GetImage, GetTissueCoordinates, HVFInfo, Idents, Idents<-, Images, Index, Index<-, Indices, IsGlobal, JS, JS<-, Key, Key<-, Loadings, Loadings<-, LogSeuratCommand, Misc, Misc<-, Neighbors, Project, Project<-, Radius, Reductions, RenameCells, RenameIdents, ReorderIdent, RowMergeSparseMatrices, SetAssayData, SetIdent, SpatiallyVariableFeatures, StashIdent, Stdev, SVFInfo, Tool, Tool<-, UpdateSeuratObject, VariableFeatures, VariableFeatures<-, WhichCells

components(object, ...)

x %||% y

x %iff% y

Contents

Developed by Rahul Satija, Satija Lab and Collaborators.

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