Load 10X Genomics Visium Tissue Positions

Load 10X Genomics Visium Tissue Positions

Usage

Read10X_Coordinates(filename, filter.matrix, cells = NULL)

Arguments

filename

Path to a tissue_positions_list.csv, tissue_positions.csv, or tissue_positions.parquet file

filter.matrix

Filter spot/feature matrix to only include spots that have been determined to be over tissue

cells

Optional barcode vector to retain. NULL reads all eligible positions. Filters are applied after reading the table.

Value

A data.frame