Project query data to reference dimensional reduction
Usage
ProjectDimReduc(
query,
reference,
mode = c("pcaproject", "lsiproject"),
reference.reduction,
combine = FALSE,
query.assay = NULL,
reference.assay = NULL,
features = NULL,
do.scale = TRUE,
reduction.name = NULL,
reduction.key = NULL,
verbose = TRUE
)Arguments
- query
Query object
- reference
Reference object
- mode
Projection mode name for projection
pcaproject: PCA projection
lsiproject: LSI projection
- reference.reduction
Name of dimensional reduction in the reference object
- combine
Determine if query and reference objects are combined
- query.assay
Assay used for query object
- reference.assay
Assay used for reference object
- features
Features used for projection
- do.scale
Determine if scale expression matrix in the pcaproject mode
- reduction.name
dimensional reduction name, reference.reduction is used by default
- reduction.key
dimensional reduction key, the key in reference.reduction is used by default
- verbose
Print progress and message