Plot clusters as a tree — PlotClusterTree • Seurat

Plots previously computed tree (from BuildClusterTree)

PlotClusterTree(object, direction = "downwards", ...)

Arguments

object: Seurat object
direction: A character string specifying the direction of the tree (default is downwards) Possible options: "rightwards", "leftwards", "upwards", and "downwards".
...: Additional arguments to ape::plot.phylo

Value

Plots dendogram (must be precomputed using BuildClusterTree), returns no value

Examples

if (FALSE) {
if (requireNamespace("ape", quietly = TRUE)) {
  data("pbmc_small")
  pbmc_small <- BuildClusterTree(object = pbmc_small)
  PlotClusterTree(object = pbmc_small)
}
}