Calculates relative contribution of each feature to each cell
for given set of features.
Usage
MetaFeature(
object,
features,
meta.name = "metafeature",
cells = NULL,
assay = NULL,
slot = "data"
)
Arguments
- object
A Seurat object
- features
List of features to aggregate
- meta.name
Name of column in metadata to store metafeature
- cells
List of cells to use (default all cells)
- assay
Which assay to use
- slot
Which slot to take data from (default data)
Value
Returns a Seurat object with metafeature stored in objct metadata
Examples
data("pbmc_small")
pbmc_small <- MetaFeature(
object = pbmc_small,
features = c("LTB", "EAF2"),
meta.name = 'var.aggregate'
)
head(pbmc_small[[]])