Load STARmap data
Usage
LoadSTARmap(
data.dir,
counts.file = "cell_barcode_count.csv",
gene.file = "genes.csv",
qhull.file = "qhulls.tsv",
centroid.file = "centroids.tsv",
assay = "Spatial",
image = "image"
)Arguments
- data.dir
location of data directory that contains the counts matrix, gene name, qhull, and centroid files.
- counts.file
name of file containing the counts matrix (csv)
- gene.file
name of file containing the gene names (csv)
- qhull.file
name of file containing the hull coordinates (tsv)
- centroid.file
name of file containing the centroid positions (tsv)
- assay
Name of assay to associate spatial data to
- image
Name of "image" object storing spatial coordinates
Value
A Seurat object