Visualize clusters spatially and interactively

ISpatialDimPlot(object, image = NULL, group.by = NULL, alpha = c(0.3, 1))

Arguments

object

Seurat object

image

Name of the image to use in the plot

group.by

Name of one or more metadata columns to group (color) cells by (for example, orig.ident); pass 'ident' to group by identity class

alpha

Controls opacity of spots. Provide as a vector specifying the min and max for SpatialFeaturePlot. For SpatialDimPlot, provide a single alpha value for each plot.

Value

Returns final plot as a ggplot object