Visualize clusters spatially and interactively — ISpatialDimPlot • Seurat

Visualize clusters spatially and interactively

ISpatialDimPlot(
  object,
  image = NULL,
  image.scale = "lowres",
  group.by = NULL,
  alpha = c(0.3, 1)
)

Arguments

object: A Seurat object
image: Name of the image to use in the plot
image.scale: Choose the scale factor ("lowres"/"hires") to apply in order to matchthe plot with the specified `image` - defaults to "lowres"
group.by: Name of meta.data column to group the data by
alpha: Controls opacity of spots. Provide as a vector specifying the min and max for SpatialFeaturePlot. For SpatialDimPlot, provide a single alpha value for each plot.

Value

Returns final plot as a ggplot object