Integrate Layers — IntegrateLayers • Seurat

Integrate Layers

Usage

IntegrateLayers(
  object,
  method,
  orig.reduction = "pca",
  assay = NULL,
  features = NULL,
  layers = NULL,
  scale.layer = "scale.data",
  ...
)

Arguments

object: A Seurat object
method: Integration method function
orig.reduction: Name of dimensional reduction for correction
assay: Name of assay for integration
features: A vector of features to use for integration
layers: Names of normalized layers in assay
scale.layer: Name(s) of scaled layer(s) in assay
...: Arguments passed on to method

Value

object with integration data added to it

See also

Writing integration method functions

Integration Method Functions

The following integration method functions are available: