Visualize features in dimensional reduction space interactively — IFeaturePlot • Seurat

Visualize features in dimensional reduction space interactively

IFeaturePlot(object, feature, dims = c(1, 2), reduction = NULL, slot = "data")

Arguments

object: Seurat object
feature: Feature to plot
dims: Dimensions to plot, must be a two-length numeric vector specifying x- and y-dimensions
reduction: Which dimensionality reduction to use. If not specified, first searches for umap, then tsne, then pca
slot: Which slot to pull expression data from?

Value

Returns the final plot as a ggplot object