Get Tissue Coordinates

Source: R/objects.R

Get Tissue Coordinates

# S3 method for SlideSeq
GetTissueCoordinates(object, ...)

# S3 method for STARmap
GetTissueCoordinates(object, qhulls = FALSE, ...)

# S3 method for VisiumV1
GetTissueCoordinates(
  object,
  scale = "lowres",
  cols = c("imagerow", "imagecol"),
  ...
)

# S3 method for VisiumV2
GetTissueCoordinates(object, scale = NULL, ...)

Arguments

object

An object

...

Arguments passed to other methods

qhulls

return qhulls instead of centroids

scale

A factor to scale the coordinates by; choose from: 'tissue', 'fiducial', 'hires', 'lowres', or NULL for no scaling

cols

Columns of tissue coordinates data.frame to pull