Find subclusters under one cluster

Source: R/clustering.R

Find subclusters under one cluster

FindSubCluster(
  object,
  cluster,
  graph.name,
  subcluster.name = "sub.cluster",
  resolution = 0.5,
  algorithm = 1
)

Arguments

object

An object
cluster

the cluster to be sub-clustered
graph.name

Name of graph to use for the clustering algorithm
subcluster.name

the name of sub cluster added in the meta.data
resolution

Value of the resolution parameter, use a value above (below) 1.0 if you want to obtain a larger (smaller) number of communities.
algorithm

Algorithm for modularity optimization (1 = original Louvain algorithm; 2 = Louvain algorithm with multilevel refinement; 3 = SLM algorithm; 4 = Leiden algorithm). Leiden requires the leidenalg python.

Value

return a object with sub cluster labels in the sub-cluster.name variable