Find subclusters under one cluster
FindSubCluster( object, cluster, graph.name, subcluster.name = "sub.cluster", resolution = 0.5, algorithm = 1 )
| object | An object |
|---|---|
| cluster | the cluster to be sub-clustered |
| graph.name | Name of graph to use for the clustering algorithm |
| subcluster.name | the name of sub cluster added in the meta.data |
| resolution | Value of the resolution parameter, use a value above (below) 1.0 if you want to obtain a larger (smaller) number of communities. |
| algorithm | Algorithm for modularity optimization (1 = original Louvain algorithm; 2 = Louvain algorithm with multilevel refinement; 3 = SLM algorithm; 4 = Leiden algorithm). Leiden requires the leidenalg python. |
return a object with sub cluster labels in the sub-cluster.name variable