Finds markers that are conserved between the groups
FindConservedMarkers( object, ident.1, ident.2 = NULL, grouping.var, assay = "RNA", slot = "data", meta.method = metap::minimump, verbose = TRUE, ... )
Identity class to define markers for
A second identity class for comparison. If NULL (default) - use all other cells for comparison.
of assay to fetch data for (default is RNA)
Slot to pull data from; note that if
method for combining p-values. Should be a function from the metap package (NOTE: pass the function, not a string)
Print a progress bar once expression testing begins
parameters to pass to FindMarkers
data.frame containing a ranked list of putative conserved markers, and associated statistics (p-values within each group and a combined p-value (such as Fishers combined p-value or others from the metap package), percentage of cells expressing the marker, average differences). Name of group is appended to each associated output column (e.g. CTRL_p_val). If only one group is tested in the grouping.var, max and combined p-values are not returned.