Creates a plot of scatter plot of features across two single cells. Pearson correlation between the two cells is displayed above the plot.
CellScatter( object, cell1, cell2, features = NULL, highlight = NULL, cols = NULL, pt.size = 1, smooth = FALSE, raster = NULL, raster.dpi = c(512, 512) )
object | Seurat object |
---|---|
cell1 | Cell 1 name |
cell2 | Cell 2 name |
features | Features to plot (default, all features) |
highlight | Features to highlight |
cols | Colors to use for identity class plotting. |
pt.size | Size of the points on the plot |
smooth | Smooth the graph (similar to smoothScatter) |
raster | Convert points to raster format, default is |
raster.dpi | Pixel resolution for rasterized plots, passed to geom_scattermore(). Default is c(512, 512). |
A ggplot object
data("pbmc_small") CellScatter(object = pbmc_small, cell1 = 'ATAGGAGAAACAGA', cell2 = 'CATCAGGATGCACA')