Convert objects to Seurat objects — as.Seurat.CellDataSet • Seurat

Convert objects to Seurat objects

Usage

# S3 method for class 'CellDataSet'
as.Seurat(x, slot = "counts", assay = "RNA", verbose = TRUE, ...)

# S3 method for class 'SingleCellExperiment'
as.Seurat(
  x,
  counts = "counts",
  data = "logcounts",
  assay = NULL,
  project = "SingleCellExperiment",
  ...
)

Arguments

x: An object to convert to class Seurat
slot: Slot to store expression data as
assay: Name of assays to convert; set to NULL for all assays to be converted
verbose: Show progress updates
...: Arguments passed to other methods
counts: name of the SingleCellExperiment assay to store as counts; set to NULL if only normalized data are present
data: name of the SingleCellExperiment assay to slot as data. Set to NULL if only counts are present
project: Project name for new Seurat object

Value

A Seurat object generated from x

Convert objects to `Seurat` objects

Usage

Arguments

Value

See also