Read count matrix from 10X CellRanger hdf5 file.
This can be used to read both scATAC-seq and scRNA-seq matrices.
Usage
Read10X_h5(filename, use.names = TRUE, unique.features = TRUE)
Arguments
- filename
Path to h5 file
- use.names
Label row names with feature names rather than ID numbers.
- unique.features
Make feature names unique (default TRUE)
Value
A sparse matrix with rows and columns labeled. Multiple feature types
return a named list of matrices; legacy multi-genome files return one entry
per genome.