Visualize features spatially and interactively — ISpatialFeaturePlot • Seurat

Visualize features spatially and interactively

ISpatialFeaturePlot(
  object,
  feature,
  image = NULL,
  slot = "data",
  alpha = c(0.1, 1)
)

Arguments

object: A Seurat object
feature: Feature to visualize
image: Name of the image to use in the plot
slot: If plotting a feature, which data slot to pull from (counts, data, or scale.data)
alpha: Controls opacity of spots. Provide as a vector specifying the min and max for SpatialFeaturePlot. For SpatialDimPlot, provide a single alpha value for each plot.

Value

Returns final plot as a ggplot object