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Installation Instructions for Seurat

  1. Install R, version 3.4 or greater
  2. Recommended : Install R Studio

Install from CRAN

Seurat is now available on CRAN for all platforms. To install, run:

# Enter commands in R (or R studio, if installed)
install.packages('Seurat')
library(Seurat)
            
If you see the warning message below, enter y:
package which is only available in source form, and may need compilation of C/C++/Fortran: 'Seurat'
Do you want to attempt to install these from sources?
y/n:
            

Install Seurat v3.0 Prerelease

A prerelease version of Seurat v3.0 is now available on GitHub. To install this prerelease version of Seurat, run:

install.packages('devtools')
devtools::install_github(repo = 'satijalab/seurat', ref = 'release/3.0')
library(Seurat)
            

Install the development version of Seurat

Install the development version of Seurat - directly from GitHub.

# Enter commands in R (or R studio, if installed)
# Install the devtools package from Hadley Wickham
install.packages('devtools')
devtools::install_github(repo = 'satijalab/seurat', ref = 'develop')
library(Seurat)