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Installation Instructions for Seurat

  1. Install R, version 3.4 or greater
  2. Recommended : Install R Studio

Install from CRAN

Seurat is available on CRAN for all platforms. To install, run:

# Enter commands in R (or R studio, if installed)
install.packages('Seurat')
library(Seurat)
            
If you see the warning message below, enter y:
package which is only available in source form, and may need compilation of C/C++/Fortran: 'Seurat'
Do you want to attempt to install these from sources?
y/n:
            
The CRAN release of Seurat is currently version 3.1.0. If you have installed version 3.1.0 and want to switch back to the last version 2, please see the "Previous Versions" tab above:

Install the development version of Seurat

Install the development version of Seurat - directly from GitHub.

# Enter commands in R (or R studio, if installed)
# Install the devtools package from Hadley Wickham

install.packages('devtools')
devtools::install_github(repo = 'satijalab/seurat', ref = 'develop')
library(Seurat)