Seurat is available on CRAN for all platforms. To install, run:
If you see the warning message below, enter
Any of the Seurat version 3 releases can be installed with the following command:
remotes::install_version("Seurat", version = "3.X.X")
To facilitate easy re-installation of the last version 2 release, we are hosting the binaries on our website. These can be installed with the following command:
Old versions of Seurat, from Seurat v2.0.1 and up, are hosted in CRAN’s archive. To install an old version of Seurat, run:
# Enter commands in R (or R studio, if installed) # Install the remotes package install.packages('remotes') # Replace '2.3.0' with your desired version remotes::install_version(package = 'Seurat', version = package_version('2.3.0')) library(Seurat)
Install the development version of Seurat - directly from GitHub.
We provide docker images for Seurat via dockerhub.
To pull the latest image from the command line:
To use as a base image in a new Dockerfile: