Generate QC heatmaps for Pan-human Azimuth cell type annotations, split by broad cell type categories and further subdivided if necessary

Generate QC heatmaps for Pan-human Azimuth cell type annotations, split by broad cell type categories and further subdivided if necessary

Usage

make_azimuth_QC_heatmaps(
  object,
  final_name = "azimuth_fine",
  level1_name = "azimuth_broad",
  full_name = "full_hierarchical_labels",
  min.final.group = 10,
  max.ids.per.plot = 15,
  ...
)

Arguments

• object:

  Seurat object containing the metadata with Azimuth annotations

• final_name:

  Column name in the metadata for the final Azimuth annotations (default ‘azimuth_fine’)

• level1_name:

  Column name in the metadata for the broad Azimuth categories (default ‘azimuth_broad’)

• full_name:

  Column name in the metadata for the full hierarchical labels (default ‘full_hierarchical_labels’)

• min.final.group:

  Minimum number of cells required in a final annotation group to be included in the heatmap (default 10)

• max.ids.per.plot:

  Maximum number of final annotation groups to include in a single heatmap (default 15)

• …:

  Additional arguments to pass to the make_QC_heatmap function for customizing the heatmaps

Value

A list of ggplot objects representing the QC heatmaps for each broad cell type category, further subdivided if necessary