Plot motif footprinting results

PlotFootprint(
object,
features,
assay = NULL,
group.by = NULL,
idents = NULL,
label = TRUE,
repel = TRUE,
show.expected = TRUE,
normalization = "subtract",
label.top = 3,
label.idents = NULL
)

## Arguments

object A Seurat object A vector of features to plot Name of assay to use A grouping variable Set of identities to include in the plot TRUE/FALSE value to control whether groups are labeled. Repel labels from each other Plot the expected Tn5 integration frequency below the main footprint plot Method to normalize for Tn5 DNA sequence bias. Options are "subtract", "divide", or NULL to perform no bias correction. Number of groups to label based on highest accessibility in motif flanking region. Vector of identities to label. If supplied, label.top will be ignored.