Count the number of sequenced DNA fragments in a region surrounding each instance of a given DNA sequence motif.
MotifCounts(
object,
motifs,
flanking.region = 1000,
assay = NULL,
verbose = TRUE,
...
)
object | A Seurat object |
---|---|
motifs | A list of DNA sequence motif names. One matrix will be generated for each motif |
flanking.region | Amount of sequence to include surrounding the motif itself |
assay | Name of assay to use. Must be a ChromatinAssay |
verbose | Display messages |
... | Additional arguments passed to |
Returns a list of sparse matrices