Count the number of sequenced DNA fragments in a region surrounding each instance of a given DNA sequence motif.

MotifCounts(
object,
motifs,
flanking.region = 1000,
assay = NULL,
verbose = TRUE,
...
)

## Arguments

object A Seurat object A list of DNA sequence motif names. One matrix will be generated for each motif Amount of sequence to include surrounding the motif itself Name of assay to use. Must be a ChromatinAssay Display messages Additional arguments passed to FeatureMatrix

## Value

Returns a list of sparse matrices