Pulls the transcript information for all chromosomes from an EnsDb object.
This wraps crunch
and applies the extractor
function to all chromosomes present in the EnsDb object.
GetGRangesFromEnsDb(
ensdb,
standard.chromosomes = TRUE,
biotypes = c("protein_coding", "lincRNA", "rRNA", "processed_transcript"),
verbose = TRUE
)
ensdb | An EnsDb object |
---|---|
standard.chromosomes | Keep only standard chromosomes |
biotypes | Biotypes to keep |
verbose | Display messages |