Display gene expression values for different groups of cells and different genes. Genes will be arranged on the x-axis and different groups stacked on the y-axis, with expression value distribution for each group shown as a violin plot. This is designed to work alongside a genomic coverage track, and the plot will be able to be aligned with coverage tracks for the same groups of cells.
ExpressionPlot(
object,
features,
assay = NULL,
group.by = NULL,
idents = NULL,
slot = "data"
)Arguments
| object | A Seurat object |
|---|---|
| features | A list of features to plot |
| assay | Name of the assay storing expression information |
| group.by | A grouping variable to group cells by. If NULL, use the current cell identities |
| idents | A list of identities to include in the plot. If NULL, include all identities |
| slot | Which slot to pull expression data from |
Examples
# \donttest{
ExpressionPlot(atac_small, features = "TSPAN6", assay = "RNA")
# }