CoveragePlot: now plots a Tn5 integration score per base, rather than the whole fragment.
GetIntersectingFeaturesfunction to find overlapping peaks between objects
MergeWithRegionsfunction to perform region-aware Seurat object merging
RunChromVARfunction to run chromVAR through Signac
RegionStatsfunction to add statistics about peak sequences to the feature metadata
FindMotifs: now selects a set of background peaks matching the sequence characteristics of the input