Single Cell Genomics Day: A (Virtual) Practical Workshop
Details
| When: | Friday April 7, 2023 10:00 AM to 5:00 PM EDT |
| Livestream: | All talks will be openly livestreamed on this website and Youtube. Registration is not required. |
Agenda
| 10:00 — 10:40 AM (EST) | Rahul Satija
New York Genome Center (NYGC) and New York University (NYU) Download Slides Single-cell genomics: Recent advances and future directions View the talk here |
| 10:40 — 11:20 AM | Samantha Morris
Washington University in St. Louis New genomic technologies to deconstruct and control cell identity |
| 11:20 — 11:40 AM | Coffee Break |
| 11:40 AM — 12:20 PM | Sten Linnarsson
Karolinska Institute Cellular diversity of the developing and adult human nervous system |
| 12:20 — 12:40 PM | Sanja Vickovic
NYGC, Columbia University Spatial host-microbiome sequencing |
| 12:40 — 1:00 PM | Brian Cleary
Boston University Compressed Perturb-seq: highly efficient screens from regulatory circuits using random composite perturbations. |
| 1:00 — 1:40 PM | Lunch Break |
| 1:40 — 2:00 PM | Jackson Weir
Harvard University, Chen Lab Slide-tags: A new methodology for generating spatially localized single cell genomics data |
| 2:00 — 2:20 PM | Madeline Kowalski
NYGC/NYU, Satija Lab Download Slides Characterizing heterogeneity in post-transcriptional regulation with single-cell sequencing |
| 2:20 — 2:40 PM | John Blair
NYGC/NYU, Satija Lab Download Slides Reconstructing regulatory networks from multimodal single cell data |
| 2:40 — 3:00 PM | Helen Kang
Stanford University, Engreitz Lab Variant-to-Gene-to-Program: an approach to trace the path between GWAS variants and common disease |
| 3:00 — 3:20 PM | Coffee Break |
| 3:20 — 4:00 PM | Jay Shendure
University of Washington Global views of mammalian development, from zygote to pup |
| 4:00 — 4:20 PM | Gesmira Molla, Yuhan Hao
NYGC/NYU, Satija Lab Download Slides Strategies for massively scalable single-cell analysis |
| 4:20 — 4:40 PM | Sydney Shaffer
University of Pennsylvania Tracing lineages and cell states from metaplasia to cancer |
Description
Recent developments in molecular biology, microfluidics, and computational biology have transformed the field of single cell genomics, and have widespread biological applications. However, the breathtaking pace of technology development has given rise to a multitude of molecular protocols, commercial systems, and computational challenges.
The Satija Lab is excited to host the seventh annual Single Cell Genomics Day on Friday, April 7, 2023. This workshop will begin with an overview of exciting developments in the field over the past year, followed by in-depth presentations on exciting methods and techniques. Our goal is to empower you to utilize single cell genomics in your work. The workshop is free and open to beginners and experts alike.
Come to:
- Learn about cutting-edge molecular technologies for multimodal single-cell analysis, cellular recording, lineage tracing, and spatial profiling.
- Discover powerful new computational approaches for transcriptional and post-transcriptional network reconstruction, integrating sequencing and imaging datasets, and scalable processing of millions of cells.
- Share ideas, troubleshoot experiments, and ask questions.
Due to the COVID-19 pandemic, Single Cell Genomics Day will take place virtually in 2023. We are able to make all talks freely available via livestream thanks to support from the National Human Genome Research Institute to the Center for Integrated Cellular Analysis.
Additional resources
Below, we list a few useful resources for those who would like to a brief introduction to the field prior to the workshop.