Single Cell Genomics Day: A (Virtual) Practical Workshop
Details
| When: | Friday March 4, 2022 10:00 AM to 5:00 PM EDT |
| Livestream: | All talks will be openly livestreamed on this website and Youtube. Registration is not required. |
| Add to Calendar: |  |
Agenda
| 10:00 — 10:40 AM (EST) | Rahul Satija
New York Genome Center (NYGC) and New York University (NYU) Download Slides Single-cell genomics: Recent advances and future directions View the talk here |
| 10:40 — 11:20 AM | Sarah Teichmann
Wellcome Sanger Institute Mapping the human body: Locating cells in time and space |
| 11:20 — 11:40 AM | Ivan Raimondi
New York Genome Center, Technology Innovation Lab Download Slides Multifactorial chromatin profiling at single-cell resolution |
| 11:40 AM — 12:00 noon | Coffee Break |
| 12:00 — 12:20 PM | Kaiyi Jiang
MIT, Abudayyeh-Gootenberg Lab Programmable eukaryotic protein expression with RNA sensors |
| 12:20 — 12:40 PM | Joseph Replogle
Whitehead Institute, Weissman Lab Mapping information-rich genotype-phenotype landscapes with genome-scale Perturb-seq |
| 12:40 — 1:00 PM | Harm Wessels, Carol Dalgarno
New York Genome Center, Satija Lab Download Slides New technologies and opportunities for single-cell perturbation screens |
| 1:00 — 1:40 PM | Lunch Break |
| 1:40 — 2:00 PM | Amy Chen
Stanford University, Greenleaf Lab NEAT-seq: Simultaneous profiling of intra-nuclear proteins, chromatin accessibility, and gene expression in single cells |
| 2:00 — 2:40 PM | Xiao Wang
MIT, Broad Institute Multimodal in situ analysis of single-cell transcriptomic states |
| 2:40 — 3:00 PM | Yuhan Hao
NYGC/NYU, Satija Lab Download Slides Cross-modality integration of single cell data |
| 3:00 — 3:20 PM | Coffee Break |
| 3:20 — 4:00 PM | Bing Ren
UC San Diego Single cell analysis of epigenome in health and disease |
| 4:00 — 4:20 PM | Jasper Janssens
VIB-KU Leuven, Aerts Lab Decoding gene regulation in the fly brain |
| 4:20 PM — 4:40 PM | Yanxiang Deng
Yale University, Fan Lab Spatial CUT&TAG: Spatially resolved chromatin modification profiling at the cellular level |
Description
Recent developments in molecular biology, microfluidics, and computational biology have transformed the field of single cell genomics, and have widespread biological applications. However, the breathtaking pace of technology development has given rise to a multitude of molecular protocols, commercial systems, and computational challenges.
The Satija Lab is excited to host the sixth annual Single Cell Genomics Day on Friday, March 4, 2022. This workshop will begin with an overview of exciting developments in the field over the past year, followed by in-depth presentations on exciting methods and techniques. Our goal is to empower you to utilize single cell genomics in your work. The workshop is free and open to beginners and experts alike.
Come to:
- Learn about cutting-edge molecular technologies including: multimodal profiling of chromatin state in single cells, measuring cellular gene expression and electrophysiology in-situ, and performing combinatorial and genome-wide single cell CRISPR screens.
- Discover powerful new computational approaches including: tools to assemble and map to multimodal reference ‘atlases’, techniques to interpret non-coding genetic variants using single-cell chromatin accessibility data, and methods for integrating spatially-resolved gene expression measurements with single-cell RNA-seq datasets.
- Share ideas, troubleshoot experiments, and ask questions.
Due to the COVID-19 pandemic, Single Cell Genomics Day will take place virtually in 2022. We are able to make all talks freely available via livestream thanks to support from the National Human Genome Research Institute to the Center for Integrated Cellular Analysis.
Additional resources
Below, we list a few useful resources for those who would like to a brief introduction to the field prior to the workshop.